WebDec 11, 2024 · A total of 19 SNPs/Indels were identified and verified, although only 11 SNPs/Indels were located close to Rcs 3 in an F 2 population of “Davis” × “Blackhawk.” The Rcs 3 gene was located close to Satt244 and 0.50 cM … A total of 77,339 and 215932 SNPs as well as 451,522 and 697,295 InDels were identified in G. max and G. soja, respectively, upon comparison with the reference genome after filtering. The average density of SNPs and InDels in G. max was observed to be about 79.04/Mb and 461.48 /Mb and 291.01 … See more Workflow diagram of the analysis done is shown in Fig. 1. A total of 118.8 million and 119.8 million potentially paired-end reads of G. max and G. soja were obtained respectively. Sequence information has been … See more SNPs and InDels were further categorized into various groups (Table 1). InDels and SNPs were more abundantly observed in upstream and downstream regulatory regions (URR and … See more DNA polymorphism observed between parental genotypes for all genes was in accordance to in silico predictions (Additional file 10: … See more
Genome-wide development of insertion-deletion (InDel) markers …
WebDec 5, 2024 · Background Single nucleotide polymorphisms (SNPs) and insertions/deletions (InDels) are the major genetic variations and are distributed extensively across the … WebSep 11, 2024 · 2.3. Genotypic Data and Genome-Wide Association Analysis. In this study, the genome data of the 213 maize inbred lines was genotyped by genotyping-by-sequencing (GBS). A total of 361,922 SNPs with missing rate ≥ 20% and minor allele frequency ≥ 0.01 of the 213 inbred lines were used for genome-wide association study … cgk corporation
Functional genomic effects of indels using Bayesian genome …
WebApr 23, 2014 · Single nucleotide polymorphisms (SNPs) and insertions–deletions (InDels) are valuable molecular markers for molecular breeding among genetically closely related cultivars. Rice (Oryza sativa L. subsp. japonica) cultivars grown in Hokkaido (45–42°N), the northernmost region of rice paddy cultivation in Japan, have been bred for over 100 … WebMar 8, 2024 · Association mapping (AM), also known as genome-wide association studies (GWAS), is increasingly being employed in crop plants for the identification of … WebNov 19, 2024 · Genome-wide association is a powerful tool to identify the molecular causes of trait diversity within species. In most association studies, genotyping single … hannah farm supply pamplico sc